• University of California San Diego/San Diego State University
  • Joint Doctoral Program in Molecular Biology, 09/92-07/97 advisor: Kathleen McGuire 
  • Doctoral dissertation: Interleukin-2 activation of intracellular signaling pathways: Effects on gene expression, proliferation, and apoptosis, pp. 1-174. 1997.
• University of Idaho, Letters and Science, 09/91-05/92
• College of Idaho, Gipson Scholar in Biology, Chemistry, and History, 09/87-05/91

• List in The World's Most Influential Scientific Minds by Thomson Reuters. 2014.
• Outstanding Faculty. College of Science. SDSU. 2014.
• Teacher Scholar. SDSU Biology. 2014.
• SDSU Phi Beta Kappa. 2013.
• American Academy of Microbiology Fellow. 2013.
• SDSU Alumni Association Award for Outstanding Faculty Contributions - "Monty". 2011.
• Achievement Award. Sigma Xi. 2009.
• International Society of Microbial Ecology Young Investigators Award. 2008.
• Canadian Institute for Advanced Research (CIFAR) Fellow in Integrated Microbial Biodiversity Program. 2007.
• American Academy for Advancement of Science (AAAS) Fellow. 2006.
• SDSU Foundation Technology Transfer Office Honorable Mention of Inventorship. 2002.
• ARCS. 1995 and 1996. Achievement award for young scientists. SDSU.       
• Sigma Xi. 1993. Grant-in-aid for graduate students. SDSU.
• NSF Research Experience for Undergraduates (REU). 1991. University of Nevada, Reno.
• Graduated summa cum laude. 1991. College of Idaho.
• Gipson Scholar. 1988-1991. For academic scholarship. College of Idaho.

• San Diego State University. Professor. 2009-present
• San Diego State University. Associate Professor. 2007-2008
• San Diego State University. Assistant Professor. 2003-2007
• San Diego State University. Adjunct Assistant Professor. 2001-2003
• Scripps Institution of Oceanography. Postdoctoral researcher with Dr. Farooq Azam. 1997-2001

Download Dr. Rohwer's complete CV (download PDF).

• Life in Our Phage World. Forest Rohwer, Merry Youle, Heather Maughan, Nao Hisakawa. Illustrations by Leah Pantéa and Ben Darby. 2015. Wholon.

• Coral Reefs in the Microbial Seas. Forest Rohwer with Merry Youle. Illustrations by Derek Vosten. 2010. Plaid Productions.

• Decoding diversity in a coral reef fish species complex with restricted range using metagenomic sequencing of gut contents.
  French BJ, Lim YW, Zgliczynski BJ, Edwards RA, Rohwer F, Sandin SA
  Ecol Evol (2020) 10(7):3413-3423 (PMC7141070)
• Gp4 is a nuclease required for morphogenesis of T4-like bacteriophages.
  Benler S, Hung SH, Vander Griend JA, Peters GA, Rohwer F, Segall AM
  Virology (2020) 543:7-12
• Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes.
  Silveira CB, Coutinho FH, Cavalcanti GS, Benler S, Doane MP, Dinsdale EA, Edwards RA, Francini-Filho RB, Thompson CC, Luque A, Rohwer FL, Thompson F
  BMC Genomics (2020) 21(1):126 (PMC7003362)
• Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome.
  Boling L, Cuevas DA, Grasis JA, Kang HS, Knowles B, Levi K, Maughan H, McNair K, Rojas MI, Sanchez SE, Smurthwaite C, Rohwer F
  Gut Microbes (2020) :1-14
• Biophysical and physiological processes causing oxygen loss from coral reefs.
  Silveira CB, Luque A, Roach TN, Villela H, Barno A, Green K, Reyes B, Rubio-Portillo E, Le T, Mead S, Hatay M, Vermeij MJ, Takeshita Y, Haas A, Bailey B, Rohwer F
  Elife (2019) 8: (PMC6890468)
• Impact of bacteria motility in the encounter rates with bacteriophage in mucus.
  Joiner KL, Baljon A, Barr J, Rohwer F, Luque A
  Sci Rep (2019) 9(1):16427 (PMC6848219)
• Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.
  Melnik AV, Vázquez-Baeza Y, Aksenov AA, Hyde E, McAvoy AC, Wang M, da Silva RR, Protsyuk I, Wu JV, Bouslimani A, Lim YW, Luzzatto-Knaan T, Comstock W, Quinn RA, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, Rohwer F, Conrad DJ, Alexandrov T, Knight R, Dorrestein PC, Garg N
  mSystems (2019) 4(5): (PMC6759567)
• Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information.
  Cobián Güemes AG, Lim YW, Quinn RA, Conrad DJ, Benler S, Maughan H, Edwards R, Brettin T, Cantú VA, Cuevas D, Hamidi R, Dorrestein P, Rohwer F
  mBio (2019) 10(2): (PMC6469968)
• Diel population and functional synchrony of microbial communities on coral reefs.
  Kelly LW, Nelson CE, Haas AF, Naliboff DS, Calhoun S, Carlson CA, Edwards RA, Fox MD, Hatay M, Johnson MD, Kelly ELA, Lim YW, Macherla S, Quinlan ZA, Silva GGZ, Vermeij MJA, Zgliczynski B, Sandin SA, Smith JE, Rohwer F
  Nat Commun (2019) 10(1):1691 (PMC6461649)
• Erratum for Schooley et al., "Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection".
  Schooley RT, Biswas B, Gill JJ, Hernandez-Morales A, Lancaster J, Lessor L, Barr JJ, Reed SL, Rohwer F, Benler S, Segall AM, Taplitz R, Smith DM, Kerr K, Kumaraswamy M, Nizet V, Lin L, McCauley MD, Strathdee SA, Benson CA, Pope RK, Leroux BM, Picel AC, Mateczun AJ, Cilwa KE, Regeimbal JM, Estrella LA, Wolfe DM, Henry MS, Quinones J, Salka S, Bishop-Lilly KA, Young R, Hamilton T
  Antimicrob. Agents Chemother. (2018) 62(12): (PMC6256779)
• A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage.
  Benler S, Cobián-Güemes AG, McNair K, Hung SH, Levi K, Edwards R, Rohwer F
  Microbiome (2018) 6(1):191 (PMC6199706)
• Gradients in Primary Production Predict Trophic Strategies of Mixotrophic Corals across Spatial Scales.
  Fox MD, Williams GJ, Johnson MD, Radice VZ, Zgliczynski BJ, Kelly ELA, Rohwer FL, Sandin SA, Smith JE
  Curr. Biol. (2018) 28(21):3355-3363.e4
• The birth of viromics: an interview with Forest Rohwer.
  Greenway A, Rohwer F
  Future Microbiol (2018) 13:1461-11462
• Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism.
  Galtier d'Auriac I, Quinn RA, Maughan H, Nothias LF, Little M, Kapono CA, Cobian A, Reyes BT, Green K, Quistad SD, Leray M, Smith JE, Dorrestein PC, Rohwer F, Deheyn DD, Hartmann AC
  Proc. Biol. Sci. (2018) 285(1884): (PMC6111180)
• Correction for Nguyen et al., "Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers".
  Nguyen S, Baker K, Padman BS, Patwa R, Dunstan RA, Weston TA, Schlosser K, Bailey B, Lithgow T, Lazarou M, Luque A, Rohwer F, Blumberg RS, Barr JJ
  MBio (2018) 9(1): (PMC5750405)
• A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction.
  Janouškovec J, Tikhonenkov DV, Burki F, Howe AT, Rohwer FL, Mylnikov AP, Keeling PJ
  Curr. Biol. (2017) 27(23):3717-3724.e5
• Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers.
  Nguyen S, Baker K, Padman BS, Patwa R, Dunstan RA, Weston TA, Schlosser K, Bailey B, Lithgow T, Lazarou M, Luque A, Rohwer F, Blumberg RS, Barr JJ
  MBio (2017) 8(6): (PMC5698557)
• Meta-mass shift chemical profiling of metabolomes from coral reefs.
  Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL
  Proc. Natl. Acad. Sci. U.S.A. (2017) 114(44):11685-11690 (PMC5676912)
• Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.
  Garg N, Wang M, Hyde E, da Silva RR, Melnik AV, Protsyuk I, Bouslimani A, Lim YW, Wong R, Humphrey G, Ackermann G, Spivey T, Brouha SS, Bandeira N, Lin GY, Rohwer F, Conrad DJ, Alexandrov T, Knight R, Dorrestein PC
  Cell Host Microbe (2017) 22(5):705-716.e4 (PMC6267898)
• Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection.
  Schooley RT, Biswas B, Gill JJ, Hernandez-Morales A, Lancaster J, Lessor L, Barr JJ, Reed SL, Rohwer F, Benler S, Segall AM, Taplitz R, Smith DM, Kerr K, Kumaraswamy M, Nizet V, Lin L, McCauley MD, Strathdee SA, Benson CA, Pope RK, Leroux BM, Picel AC, Mateczun AJ, Cilwa KE, Regeimbal JM, Estrella LA, Wolfe DM, Henry MS, Quinones J, Salka S, Bishop-Lilly KA, Young R, Hamilton T
  Antimicrob. Agents Chemother. (2017) 61(10): (PMC5610518)
• A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells.
  Fridman S, Flores-Uribe J, Larom S, Alalouf O, Liran O, Yacoby I, Salama F, Bailleul B, Rappaport F, Ziv T, Sharon I, Cornejo-Castillo FM, Philosof A, Dupont CL, Sánchez P, Acinas SG, Rohwer FL, Lindell D, Béjà O
  Nat Microbiol (2017) 2(10):1350-1357
• Piggyback-the-Winner in host-associated microbial communities.
  Silveira CB, Rohwer FL
  NPJ Biofilms Microbiomes (2017) 2:16010 (PMC5515262)
• Microbial bioenergetics of coral-algal interactions.
  Roach TNF, Abieri ML, George EE, Knowles B, Naliboff DS, Smurthwaite CA, Kelly LW, Haas AF, Rohwer FL
  PeerJ (2017) 5:e3423 (PMC5482263)
• Ecological networking of cystic fibrosis lung infections.
  Quinn RA, Whiteson K, Lim YW, Zhao J, Conrad D, LiPuma JJ, Rohwer F, Widder S
  NPJ Biofilms Microbiomes (2017) 2:4 (PMC5460249)
• Variability and host density independence in inductions-based estimates of environmental lysogeny.
  Knowles B, Bailey B, Boling L, Breitbart M, Cobián-Güemes A, Del Campo J, Edwards R, Felts B, Grasis J, Haas AF, Katira P, Kelly LW, Luque A, Nulton J, Paul L, Peters G, Robinett N, Sandin S, Segall A, Silveira C, Youle M, Rohwer F
  Nat Microbiol (2017) 2:17064
• Spatial Molecular Architecture of the Microbial Community of a Lichen.
  Garg N, Zeng Y, Edlund A, Melnik AV, Sanchez LM, Mohimani H, Gurevich A, Miao V, Schiffler S, Lim YW, Luzzatto-Knaan T, Cai S, Rohwer F, Pevzner PA, Cichewicz RH, Alexandrov T, Dorrestein PC
  mSystems (2016) 1(6): (PMC5183598)
• Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics.
  Janouškovec J, Gavelis GS, Burki F, Dinh D, Bachvaroff TR, Gornik SG, Bright KJ, Imanian B, Strom SL, Delwiche CF, Waller RF, Fensome RA, Leander BS, Rohwer FL, Saldarriaga JF
  Proc. Natl. Acad. Sci. U.S.A. (2016) 114(2):E171-E180 (PMC5240707)
• Viruses and the origin of microbiome selection and immunity.
  Quistad SD, Grasis JA, Barr JJ, Rohwer FL
  ISME J (2016) 11(4):835-840 (PMC5364363)
• Viruses as Winners in the Game of Life.
  Cobián Güemes AG, Youle M, Cantú VA, Felts B, Nulton J, Rohwer F
  Annu Rev Virol (2016) 3(1):197-214
• Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease.
  Quinn RA, Lim YW, Mak TD, Whiteson K, Furlan M, Conrad D, Rohwer F, Dorrestein P
  PeerJ (2016) 4:e2174 (PMC4991883)
• Using viromes to predict novel immune proteins in non-model organisms.
  Quistad SD, Lim YW, Silva GG, Nelson CE, Haas AF, Kelly LW, Edwards RA, Rohwer FL
  Proc. Biol. Sci. (2016) 283(1837): (PMC5013795)
• Global microbialization of coral reefs.
  Haas AF, Fairoz MF, Kelly LW, Nelson CE, Dinsdale EA, Edwards RA, Giles S, Hatay M, Hisakawa N, Knowles B, Lim YW, Maughan H, Pantos O, Roach TN, Sanchez SE, Silveira CB, Sandin S, Smith JE, Rohwer F
  Nat Microbiol (2016) 1(6):16042
• Phage on tap-a quick and efficient protocol for the preparation of bacteriophage laboratory stocks.
  Bonilla N, Rojas MI, Netto Flores Cruz G, Hung SH, Rohwer F, Barr JJ
  PeerJ (2016) 4:e2261 (PMC4975003)
• Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence.
  Quinn RA, Vermeij MJ, Hartmann AC, Galtier d'Auriac I, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F
  Proc. Biol. Sci. (2016) 283(1829): (PMC4855392)
• Energetic differences between bacterioplankton trophic groups and coral reef resistance.
  McDole Somera T, Bailey B, Barott K, Grasis J, Hatay M, Hilton BJ, Hisakawa N, Nosrat B, Nulton J, Silveira CB, Sullivan C, Brainard RE, Rohwer F
  Proc. Biol. Sci. (2016) 283(1829): (PMC4855391)
• Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific.
  Smith JE, Brainard R, Carter A, Grillo S, Edwards C, Harris J, Lewis L, Obura D, Rohwer F, Sala E, Vroom PS, Sandin S
  Proc. Biol. Sci. (2016) 283(1822): (PMC4721084)
• Closing the gaps on the viral photosystem-I psaDCAB gene organization.
  Roitman S, J Flores-Uribe, A Philosof, Ben Knowles, F Rohwer, JC Ignacio-Espinoza, MB Sullivan, FM Cornejo-Castillo, P Sánchez, SG Acinas, CL Dupont, O Béjà
  Environmental Microbiology (2015) : 10.1111/1462-2920.13036
• Metagenomic and satellite analyses of red snow in the Russian Arctic.
  Hisakawa N, S Quistad, E Hester, D Martynova, H Maughan, E Sala, M Gavrilo, F Rohwer
  PeerJ (2015) : 10.7717/peerj.1491
• A century of phage lessons.
  Rohwer F and AM Segall
  Nature (2015) 528(7580):46-48 26632584 10.1038/528046a
• Microbial, host, and xenobiotic diversity in the cystic fibrosis sputum metabolome.
  Quinn RA, V Phelan, K Whiteson, N Garg, BA Bailey, YW Lim, DJ Conrad, PC Dorrestein, F Rohwer
  The ISME Journal (2015) : 10.1038/ismej.2015.207
• Can we measure beauty? Computational evaluation of coral reef aesthetics
  Andreas Haas, Marine Guibert, Anja Foerschner, Tim Co, Sandi Calhoun, Emma George, Mark Hatay, Elizabeth Dinsdale, Stuart A. Sandin, Jennifer E. Smith, Mark J.A. Vermeij, Ben Felts, Philip Dustan, Peter Salamon, Forest Rohwer
  PeerJ (2015) 3(e1390): https://dx.doi.org/10.7717/peerj.1390
• Some of the most interesting CASP11 targets through the eyes of their authors.
  Kryshtafovych A, J Moult, A Baslé, A Burgin, TK Craig, RA Edwards, D Fass, MD Hartmann, M Korycinski, RJ Lewis, D Lorimer, AN Lupas, J Newman, TS Peat, K Piepenbrink, J Prahlad, MJ van Raaij, F Rohwer, A Segall, V Seguritan, E Sundberg, AK Singh, MA Wilson, T Schwede
  Proteins (2015) : 10.1002/prot.24942
• Stable and sporadic symbiotic communities of coral and algal holobionts.
  Hester E, KL Barott, J Nulton, MJA Vermeij, F Rohwer
  The ISME Journal (2015) : 10.1038/ismej.2015.190
• Bacteriophage subdiffusive hunting strategy in mucosal surfaces
  Barr JJ, R Auro, N Sam-Soon, S Kassegne, G Peters, N Bonilla, M Hatay, S Mourtada, B Bailey, M Youle, B Felts, A Baljon, J Nulton, P Salamon, F Rohwer
  PNAS (2015) : 10.1073/pnas.1508355112
• The gut DNA viromes of Malawian twins discordant for severe acute undernutrition.
  Reyes A, LV Blanton, S Cao, G Zhao, MJ Manary, I Trehan, D Wang, HW Virgin, F Rohwer, JI Gordon
  PNAS (0) : 10.1073/pnas.1514285112
• Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples.
  Lim YW, Haynes M, Furlan M, Robertson CE, Harris JK, Rohwer F
  J Vis Exp (2014) (94):
• Diversity of viral photosystem-I psaA genes.
  Hevroni G, Enav H, Rohwer F, Béjà O
  ISME J (2014) :
• A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation.
  Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F
  ISME J (2014) :
• Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology.
  Haas AF, Knowles B, Lim YW, McDole Somera T, Kelly LW, Hatay M, Rohwer F
  J Vis Exp (2014) (93):e52131
• Stochastic tracking of infection in a CF lung.
  Zarei S, Mirtar A, Rohwer F, Salamon P
  PLoS ONE (2014) 9(10):e111245 (PMC4216002)
• Species-specific viromes in the ancestral holobiont Hydra.
  Grasis JA, Lachnit T, Anton-Erxleben F, Lim YW, Schmieder R, Fraune S, Franzenburg S, Insua S, Machado G, Haynes M, Little M, Kimble R, Rosenstiel P, Rohwer FL, Bosch TC
  PLoS ONE (2014) 9(10):e109952 (PMC4208763)
• Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition.
  Lim YW, Cuevas DA, Silva GG, Aguinaldo K, Dinsdale EA, Haas AF, Hatay M, Sanchez SE, Wegley-Kelly L, Dutilh BE, Harkins TT, Lee CC, Tom W, Sandin SA, Smith JE, Zgliczynski B, Vermeij MJ, Rohwer F, Edwards RA
  PeerJ (2014) 2:e520 (PMC4145072)
• Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.
  Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin SA, Smith JE, Vermeij MJ, Youle M, Rohwer F
  Proc. Natl. Acad. Sci. U.S.A. (2014) 111(28):10227-32 (PMC4104888)
• Evolution of TNF-induced apoptosis reveals 550 My of functional conservation.
  Quistad SD, Stotland A, Barott KL, Smurthwaite CA, Hilton BJ, Grasis JA, Wolkowicz R, Rohwer FL
  Proc. Natl. Acad. Sci. U.S.A. (2014) 111(26):9567-72 (PMC4084427)
• Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation.
  Whiteson KL, Meinardi S, Lim YW, Schmieder R, Maughan H, Quinn R, Blake DR, Conrad D, Rohwer F
  ISME J (2014) 8(6):1247-58 (PMC4030226)
• The origins of ambient biological sound from coral reef ecosystems in the Line Islands archipelago.
  Freeman SE, Rohwer FL, D'Spain GL, Friedlander AM, Gregg AK, Sandin SA, Buckingham MJ
  J. Acoust. Soc. Am. (2014) 135(4):1775-88
• Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung.
  Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson KL
  MBio (2014) 5(2):e00956-13 (PMC3967525)
• Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis.
  Lim YW, Evangelista JS, Schmieder R, Bailey B, Haynes M, Furlan M, Maughan H, Edwards R, Rohwer F, Conrad D
  J. Clin. Microbiol. (2014) 52(2):425-37 (PMC3911355)
• Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10.
  Kryshtafovych A, Moult J, Bales P, Bazan JF, Biasini M, Burgin A, Chen C, Cochran FV, Craig TK, Das R, Fass D, Garcia-Doval C, Herzberg O, Lorimer D, Luecke H, Ma X, Nelson DC, van Raaij MJ, Rohwer F, Segall A, Seguritan V, Zeth K, Schwede T
  Proteins (2014) 82 Suppl 2:26-42 (PMC4072496)
• Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.
  Reyes A, Wu M, McNulty NP, Rohwer FL, Gordon JI
  Proc. Natl. Acad. Sci. U.S.A. (2013) 110(50):20236-41 (PMC3864308)
• Innate and acquired bacteriophage-mediated immunity.
  Barr JJ, Youle M, Rohwer F
  Bacteriophage (2013) 3(3):e25857 (PMC3821666)
• Influence of coral and algal exudates on microbially mediated reef metabolism.
  Haas AF, Nelson CE, Rohwer F, Wegley-Kelly L, Quistad SD, Carlson CA, Leichter JJ, Hatay M, Smith JE
  PeerJ (2013) 1:e108 (PMC3719129)
• Visualization of oxygen distribution patterns caused by coral and algae.
  Haas AF, Gregg AK, Smith JE, Abieri ML, Hatay M, Rohwer F
  PeerJ (2013) 1:e106 (PMC3719126)
• Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data.
  Lim YW, Schmieder R, Haynes M, Furlan M, Matthews TD, Whiteson K, Poole SJ, Hayes CS, Low DA, Maughan H, Edwards R, Conrad D, Rohwer F
  PLoS ONE (2013) 8(5):e64285 (PMC3667864)
• Bacteriophage adhering to mucus provide a non-host-derived immunity.
  Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F
  Proc. Natl. Acad. Sci. U.S.A. (2013) 110(26):10771-6 (PMC3696810)
• Structure and function of a cyanophage-encoded peptide deformylase.
  Frank JA, Lorimer D, Youle M, Witte P, Craig T, Abendroth J, Rohwer F, Edwards RA, Segall AM, Burgin AB
  ISME J (2013) 7(6):1150-60 (PMC3660681)
• Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.
  Nelson CE, Goldberg SJ, Wegley Kelly L, Haas AF, Smith JE, Rohwer F, Carlson CA
  ISME J (2013) 7(5):962-79 (PMC3635233)
• Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness.
  Mokili JL, Dutilh BE, Lim YW, Schneider BS, Taylor T, Haynes MR, Metzgar D, Myers CA, Blair PJ, Nosrat B, Wolfe ND, Rohwer F
  PLoS ONE (2013) 8(3):e58404 (PMC3600855)
• Viral information.
  Rohwer F, Barott K
  Biol Philos (2013) 28(2):283-297 (PMC3585991)
• Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities.
  Lim YW, Schmieder R, Haynes M, Willner D, Furlan M, Youle M, Abbott K, Edwards R, Evangelista J, Conrad D, Rohwer F
  J. Cyst. Fibros. (2013) 12(2):154-64 (PMC3534838)
• Environmental distribution of coral-associated relatives of apicomplexan parasites.
  Janouškovec J, Horák A, Barott KL, Rohwer FL, Keeling PJ
  ISME J (2013) 7(2):444-7 (PMC3554414)
• Cystic fibrosis therapy: a community ecology perspective.
  Conrad D, Haynes M, Salamon P, Rainey PB, Youle M, Rohwer F
  Am. J. Respir. Cell Mol. Biol. (2013) 48(2):150-6 (PMC3604065)
• Unseen players shape benthic competition on coral reefs.
  Barott KL, Rohwer FL
  Trends Microbiol. (2012) 20(12):621-8
• Mucus distribution model in a lung with cystic fibrosis.
  Zarei S, Mirtar A, Rohwer F, Conrad DJ, Theilmann RJ, Salamon P
  Comput Math Methods Med (2012) 2012:970809 (PMC3483681)
• Oxygen minimum zones harbour novel viral communities with low diversity.
  Cassman N, Prieto-Davó A, Walsh K, Silva GG, Angly F, Akhter S, Barott K, Busch J, McDole T, Haggerty JM, Willner D, Alarcón G, Ulloa O, DeLong EF, Dutilh BE, Rohwer F, Dinsdale EA
  Environ. Microbiol. (2012) 14(11):3043-65
• Assessing coral reefs on a Pacific-wide scale using the microbialization score.
  McDole T, Nulton J, Barott KL, Felts B, Hand C, Hatay M, Lee H, Nadon MO, Nosrat B, Salamon P, Bailey B, Sandin SA, Vargas-Angel B, Youle M, Zgliczynski BJ, Brainard RE, Rohwer F
  PLoS ONE (2012) 7(9):e43233 (PMC3436891)
• Going viral: next-generation sequencing applied to phage populations in the human gut.
  Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI
  Nat. Rev. Microbiol. (2012) 10(9):607-17 (PMC3596094)
• The Microbial Olympics.
  Youle M, Rohwer F, Stacy A, Whiteley M, Steel BC, Delalez NJ, Nord AL, Berry RM, Armitage JP, Kamoun S, Hogenhout S, Diggle SP, Gurney J, Pollitt EJ, Boetius A, Cary SC
  Nat. Rev. Microbiol. (2012) 10(8):583-8
• Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs.
  Janouškovec J, Horák A, Barott KL, Rohwer FL, Keeling PJ
  Curr. Biol. (2012) 22(13):R518-9
• Grinder: a versatile amplicon and shotgun sequence simulator.
  Angly FE, Willner D, Rohwer F, Hugenholtz P, Tyson GW
  Nucleic Acids Res. (2012) 40(12):e94 (PMC3384353)
• Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.
  Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA
  ISME J (2012) 6(5):915-26 (PMC3329113)
• Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae.
  Barott KL, Rodriguez-Mueller B, Youle M, Marhaver KL, Vermeij MJ, Smith JE, Rohwer FL
  Proc. Biol. Sci. (2012) 279(1733):1655-64 (PMC3282354)
• Black reefs: iron-induced phase shifts on coral reefs.
  Kelly LW, Barott KL, Dinsdale E, Friedlander AM, Nosrat B, Obura D, Sala E, Sandin SA, Smith JE, Vermeij MJ, Williams GJ, Willner D, Rohwer F
  ISME J (2012) 6(3):638-49 (PMC3280131)
• Metagenomics and future perspectives in virus discovery.
  Mokili JL, Rohwer F, Dutilh BE
  Curr Opin Virol (2012) 2(1):63-77
• New abundant microbial groups in aquatic hypersaline environments.
  Ghai R, Pašić L, Fernández AB, Martin-Cuadrado AB, Mizuno CM, McMahon KD, Papke RT, Stepanauskas R, Rodriguez-Brito B, Rohwer F, Sánchez-Porro C, Ventosa A, Rodríguez-Valera F
  Sci Rep (2012) 1:135 (PMC3216616)
• Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung.
  Willner D, Haynes MR, Furlan M, Hanson N, Kirby B, Lim YW, Rainey PB, Schmieder R, Youle M, Conrad D, Rohwer F
  Am. J. Respir. Cell Mol. Biol. (2012) 46(2):127-31 (PMC3361360)
• Spatial distribution of microbial communities in the cystic fibrosis lung.
  Willner D, Haynes MR, Furlan M, Schmieder R, Lim YW, Rainey PB, Rohwer F, Conrad D
  ISME J (2012) 6(2):471-4 (PMC3260497)
• Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity.
  Haas AF, Nelson CE, Wegley Kelly L, Carlson CA, Rohwer F, Leichter JJ, Wyatt A, Smith JE
  PLoS ONE (2011) 6(11):e27973 (PMC3220721)
• Comparative metagenomics of microbial traits within oceanic viral communities.
  Sharon I, Battchikova N, Aro EM, Giglione C, Meinnel T, Glaser F, Pinter RY, Breitbart M, Rohwer F, Béjà O
  ISME J (2011) 5(7):1178-90 (PMC3146289)
• Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes.
  Ng TF, Willner DL, Lim YW, Schmieder R, Chau B, Nilsson C, Anthony S, Ruan Y, Rohwer F, Breitbart M
  PLoS ONE (2011) 6(6):e20579 (PMC3108952)
• Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis.
  Barott KL, Rodriguez-Brito B, Janouškovec J, Marhaver KL, Smith JE, Keeling P, Rohwer FL
  Environ. Microbiol. (2011) 13(5):1192-204
• Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.
  Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M
  Proc. Natl. Acad. Sci. U.S.A. (2011) 108 Suppl :4547-53 (PMC3063595)
• Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets.
  Alperovitch-Lavy A, Sharon I, Rohwer F, Aro EM, Glaser F, Milo R, Nelson N, Béjà O
  Environ. Microbiol. (2011) 13(1):24-32
• Viruses in the faecal microbiota of monozygotic twins and their mothers.
  Reyes A, Haynes M, Hanson N, Angly FE, Heath AC, Rohwer F, Gordon JI
  Nature (2010) 466(7304):334-8 (PMC2919852)
• TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets.
  Schmieder R, Lim YW, Rohwer F, Edwards R
  BMC Bioinformatics (2010) 11:341 (PMC2910026)
• The lagoon at Caroline/Millennium atoll, Republic of Kiribati: natural history of a nearly pristine ecosystem.
  Barott KL, Caselle JE, Dinsdale EA, Friedlander AM, Maragos JE, Obura D, Rohwer FL, Sandin SA, Smith JE, Zgliczynski B
  PLoS ONE (2010) 5(6):e10950 (PMC2880600)
• Viral and microbial community dynamics in four aquatic environments.
  Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, Martin-Cuadrado AB, Mira A, Nulton J, Pasić L, Rayhawk S, Rodriguez-Mueller J, Rodriguez-Valera F, Salamon P, Srinagesh S, Thingstad TF, Tran T, Thurber RV, Willner D, Youle M, Rohwer F
  ISME J (2010) 4(6):739-51
• Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge.
  He S, Kunin V, Haynes M, Martin HG, Ivanova N, Rohwer F, Hugenholtz P, McMahon KD
  Environ. Microbiol. (2010) 12(5):1205-17
• Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber.
  Pasić L, Rodriguez-Mueller B, Martin-Cuadrado AB, Mira A, Rohwer F, Rodriguez-Valera F.
  BMC Genomics (2010) 10:570 (PMC2800850)
• The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.
  Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, Kirchman DL, McDole T, McPherson JD, Meyer F, Miller RM, Mundt E, Naviaux RK, Rodriguez-Mueller B, Stevens R, Wegley L, Zhang L, Zhu B, Rohwer F
  PLoS Comput. Biol. (2009) 5(12):e1000593 (PMC2781106)
• Hyperspectral and physiological analyses of coral-algal interactions.
  Barott K, Smith J, Dinsdale E, Hatay M, Sandin S, Rohwer F
  PLoS ONE (2009) 4(11):e8043 (PMC2778555)
• Roles of viruses in the environment.
  Rohwer F, Prangishvili D, Lindell D
  Environ. Microbiol. (2009) 11(11):2771-4
• Explaining microbial population genomics through phage predation.
  Rodriguez-Valera F, Martin-Cuadrado AB, Rodriguez-Brito B, Pasić L, Thingstad TF, Rohwer F, Mira A
  Nat. Rev. Microbiol. (2009) 7(11):828-36
• Genomic analysis of multiple Roseophage SIO1 strains.
  Angly F, Youle M, Nosrat B, Srinagesh S, Rodriguez-Brito B, McNairnie P, Deyanat-Yazdi G, Breitbart M, Rohwer F
  Environ. Microbiol. (2009) 11(11):2863-73
• Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals.
  Willner D, Furlan M, Haynes M, Schmieder R, Angly FE, Silva J, Tammadoni S, Nosrat B, Conrad D, Rohwer F
  PLoS ONE (2009) 4(10):e7370 (PMC2756586)
• Photosystem I gene cassettes are present in marine virus genomes.
  Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI, Nelson N, Béjà O
  Nature (2009) 461(7261):258-62
• Metagenomic analysis of stressed coral holobionts.
  Vega Thurber R, Willner-Hall D, Rodriguez-Mueller B, Desnues C, Edwards RA, Angly F, Dinsdale E, Kelly L, Rohwer F
  Environ. Microbiol. (2009) 11(8):2148-63
• Metagenomic signatures of 86 microbial and viral metagenomes.
  Willner D, Thurber RV, Rohwer F
  Environ. Microbiol. (2009) 11(7):1752-66
• Viruses manipulate the marine environment.
  Rohwer F, Thurber RV
  Nature (2009) 459(7244):207-12
• Laboratory procedures to generate viral metagenomes.
  Thurber RV, Haynes M, Breitbart M, Wegley L, Rohwer F
  Nat Protoc (2009) 4(4):470-83
• Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico.
  Breitbart M, Hoare A, Nitti A, Siefert J, Haynes M, Dinsdale E, Edwards R, Souza V, Rohwer F, Hollander D
  Environ. Microbiol. (2009) 11(1):16-34
• Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa.
  Vega Thurber RL, Barott KL, Hall D, Liu H, Rodriguez-Mueller B, Desnues C, Edwards RA, Haynes M, Angly FE, Wegley L, Rohwer FL
  Proc. Natl. Acad. Sci. U.S.A. (2008) 105(47):18413-8 (PMC2584576)
• Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression.
  McDaniel L, Breitbart M, Mobberley J, Long A, Haynes M, Rohwer F, Paul JH
  PLoS ONE (2008) 3(9):e3263 (PMC2533394)
• Dissecting microbial employment.
  Dinsdale EA, Rohwer F
  Nat. Biotechnol. (2008) 26(9):997-8
• Viral communities associated with healthy and bleaching corals.
  Marhaver KL, Edwards RA, Rohwer F
  Environ. Microbiol. (2008) 10(9):2277-86 (PMC2702503)
• Viral diversity and dynamics in an infant gut.
  Breitbart M, Haynes M, Kelley S, Angly F, Edwards RA, Felts B, Mahaffy JM, Mueller J, Nulton J, Rayhawk S, Rodriguez-Brito B, Salamon P, Rohwer F
  Res. Microbiol. (2008) 159(5):367-73
• The airborne metagenome in an indoor urban environment.
  Tringe SG, Zhang T, Liu X, Yu Y, Lee WH, Yap J, Yao F, Suan ST, Ing SK, Haynes M, Rohwer F, Wei CL, Tan P, Bristow J, Rubin EM, Ruan Y
  PLoS ONE (2008) 3(4):e1862 (PMC2270337)
• Functional metagenomic profiling of nine biomes.
  Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F
  Nature (2008) 452(7187):629-32
• Phylogenetic classification of short environmental DNA fragments.
  Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J
  Nucleic Acids Res. (2008) 36(7):2230-9 (PMC2367736)
• Biodiversity and biogeography of phages in modern stromatolites and thrombolites.
  Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, Thurber RV, Reid RP, Siefert J, Souza V, Valentine DL, Swan BK, Breitbart M, Rohwer F
  Nature (2008) 452(7185):340-3
• Microbial ecology of four coral atolls in the Northern Line Islands.
  Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, Wegley L, Hatay M, Hall D, Brown E, Haynes M, Krause L, Sala E, Sandin SA, Thurber RV, Willis BL, Azam F, Knowlton N, Rohwer F
  PLoS ONE (2008) 3(2):e1584 (PMC2253183)
• Baselines and degradation of coral reefs in the Northern Line Islands.
  Sandin SA, Smith JE, Demartini EE, Dinsdale EA, Donner SD, Friedlander AM, Konotchick T, Malay M, Maragos JE, Obura D, Pantos O, Paulay G, Richie M, Rohwer F, Schroeder RE, Walsh S, Jackson JB, Knowlton N, Sala E
  PLoS ONE (2008) 3(2):e1548 (PMC2244711)
• A bacterial metapopulation adapts locally to phage predation despite global dispersal.
  Kunin V, He S, Warnecke F, Peterson SB, Garcia Martin H, Haynes M, Ivanova N, Blackall LL, Breitbart M, Rohwer F, McMahon KD, Hugenholtz P
  Genome Res. (2008) 18(2):293-7 (PMC2203627)
• Metagenomic analysis of the microbial community associated with the coral Porites astreoides.
  Wegley L, Edwards R, Rodriguez-Brito B, Liu H, Rohwer F
  Environ. Microbiol. (2007) 9(11):2707-19
• Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil.
  Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB
  Appl. Environ. Microbiol. (2007) 73(21):7059-66 (PMC2074941)
• Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals.
  Beman JM, Roberts KJ, Wegley L, Rohwer F, Francis CA
  Appl. Environ. Microbiol. (2007) 73(17):5642-7 (PMC2042080)
• Power law rank-abundance models for marine phage communities.
  Hoffmann KH, Rodriguez-Brito B, Breitbart M, Bangor D, Angly F, Felts B, Nulton J, Rohwer F, Salamon P
  FEMS Microbiol. Lett. (2007) 273(2):224-8
• Phage metagenomics.
  Casas V, Rohwer F
  Meth. Enzymol. (2007) 421:259-68
• Real-time microbial ecology.
  Rohwer F
  Environ. Microbiol. (2007) 9(1):10
• The marine viromes of four oceanic regions.
  Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F
  PLoS Biol. (2006) 4(11):e368 (PMC1634881)
• Rapid estimation of microbial numbers in water using bulk fluorescence.
  Wegley L, Mosier-Boss P, Lieberman S, Andrews J, Graff-Baker A, Rohwer F
  Environ. Microbiol. (2006) 8(10):1775-82
• Widespread occurrence of phage-encoded exotoxin genes in terrestrial and aquatic environments in Southern California.
  Casas V, Miyake J, Balsley H, Roark J, Telles S, Leeds S, Zurita I, Breitbart M, Bartlett D, Azam F, Rohwer F
  FEMS Microbiol. Lett. (2006) 261(1):141-9
• Finding novel genes in bacterial communities isolated from the environment.
  Krause L, Diaz NN, Bartels D, Edwards RA, Pühler A, Rohwer F, Meyer F, Stoye J
  Bioinformatics (2006) 22(14):e281-9
• Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality.
  Smith JE, Shaw M, Edwards RA, Obura D, Pantos O, Sala E, Sandin SA, Smriga S, Hatay M, Rohwer FL
  Ecol. Lett. (2006) 9(7):835-45
• Using pyrosequencing to shed light on deep mine microbial ecology.
  Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC, Rohwer F
  BMC Genomics (2006) 7:57 (PMC1483832)
• An application of statistics to comparative metagenomics.
  Rodriguez-Brito B, Rohwer F, Edwards RA
  BMC Bioinformatics (2006) 7:162 (PMC1473205)
• FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries.
  Yu Y, Breitbart M, McNairnie P, Rohwer F
  BMC Bioinformatics (2006) 7:57 (PMC1386709)
• RNA viral community in human feces: prevalence of plant pathogenic viruses.
  Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SW, Hibberd ML, Liu ET, Rohwer F, Ruan Y
  PLoS Biol. (2006) 4(1):e3 (PMC1310650)
• Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing.
  Breitbart M, Rohwer F
  BioTechniques (2005) 39(5):729-36
• Here a virus, there a virus, everywhere the same virus?
  Breitbart M, Rohwer F
  Trends Microbiol. (2005) 13(6):278-84
• Complete genome sequence of phiHSIC, a pseudotemperate marine phage of Listonella pelagia.
  Paul JH, Williamson SJ, Long A, Authement RN, John D, Segall AM, Rohwer FL, Androlewicz M, Patterson S
  Appl. Environ. Microbiol. (2005) 71(6):3311-20 (PMC1151857)
• Viral metagenomics.
  Edwards RA, Rohwer F
  Nat. Rev. Microbiol. (2005) 3(6):504-10
• A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains.
  Purdy A, Rohwer F, Edwards R, Azam F, Bartlett DH
  J. Bacteriol. (2005) 187(9):2992-3001 (PMC1082809)
• Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations.
  Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW
  PLoS Biol. (2005) 3(5):e144 (PMC1079782)
• PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.
  Angly F, Rodriguez-Brito B, Bangor D, McNairnie P, Breitbart M, Salamon P, Felts B, Nulton J, Mahaffy J, Rohwer F
  BMC Bioinformatics (2005) 6:41 (PMC555943)
• 2004 ASM Conference on the New Phage Biology: the 'Phage Summit'.
  Adhya S, Black L, Friedman D, Hatfull G, Kreuzer K, Merril C, Oppenheim A, Rohwer F, Young R
  Mol. Microbiol. (2005) 55(5):1300-14
• Microbial communities associated with skeletal tumors on Porites compressa.
  Breitbart M, Bhagooli R, Griffin S, Johnston I, Rohwer F
  FEMS Microbiol. Lett. (2005) 243(2):431-6
• Widespread association of a Rickettsiales-like bacterium with reef-building corals.
  Casas V, Kline DI, Wegley L, Yu Y, Breitbart M, Rohwer F
  Environ. Microbiol. (2004) 6(11):1137-48
• Movement of viruses between biomes.
  Sano E, Carlson S, Wegley L, Rohwer F
  Appl. Environ. Microbiol. (2004) 70(10):5842-6 (PMC522096)
• Transfer of photosynthesis genes to and from Prochlorococcus viruses.
  Lindell D, Sullivan MB, Johnson ZI, Tolonen AC, Rohwer F, Chisholm SW
  Proc. Natl. Acad. Sci. U.S.A. (2004) 101(30):11013-8 (PMC503735)
• Global distribution of nearly identical phage-encoded DNA sequences.
  Breitbart M, Miyake JH, Rohwer F
  FEMS Microbiol. Lett. (2004) 236(2):249-56
• Diversity and population structure of a near-shore marine-sediment viral community.
  Breitbart M, Felts B, Kelley S, Mahaffy JM, Nulton J, Salamon P, Rohwer F
  Proc. Biol. Sci. (2004) 271(1539):565-74 (PMC1691639)
• Phage community dynamics in hot springs.
  Breitbart M, Wegley L, Leeds S, Schoenfeld T, Rohwer F
  Appl. Environ. Microbiol. (2004) 70(3):1633-40 (PMC368299)
• Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C.
  Seguritan V, Feng IW, Rohwer F, Swift M, Segall AM
  J. Bacteriol. (2003) 185(21):6434-47 (PMC219397)
• Multispecies microbial mutualisms on coral reefs: the host as a habitat.
  Knowlton N, Rohwer F
  Am. Nat. (2003) 162(4 Suppl):S51-62
• Metagenomic analyses of an uncultured viral community from human feces.
  Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, Salamon P, Rohwer F
  J. Bacteriol. (2003) 185(20):6220-3 (PMC225035)
• IL-2 activation of a PI3K-dependent STAT3 serine phosphorylation pathway in primary human T cells.
  Fung MM, Rohwer F, McGuire KL
  Cell. Signal. (2003) 15(6):625-36
• Global phage diversity.
  Rohwer F
  Cell (2003) 113(2):141
• Marine phage genomics.
  Paul JH, Sullivan MB, Segall AM, Rohwer F
  Comp. Biochem. Physiol. B, Biochem. Mol. Biol. (2002) 133(4):463-76
• Genomic analysis of uncultured marine viral communities.
  Breitbart M, Salamon P, Andresen B, Mahaffy JM, Segall AM, Mead D, Azam F, Rohwer F
  Proc. Natl. Acad. Sci. U.S.A. (2002) 99(22):14250-5 (PMC137870)
• The Phage Proteomic Tree: a genome-based taxonomy for phage.
  Rohwer F, Edwards R
  J. Bacteriol. (2002) 184(16):4529-35 (PMC135240)
• Use of 16S ribosomal DNA for delineation of marine bacterioplankton species.
  Hagström A, Pommier T, Rohwer F, Simu K, Stolte W, Svensson D, Zweifel UL
  Appl. Environ. Microbiol. (2002) 68(7):3628-33 (PMC126765)